Agent Skills Directory

Comprehensive manuscript review covering argument structure, identification strategy, econometric specification, citation completeness, and potential referee objections.

Comprehensive manuscript review covering argument structure, econometric specification, citation completeness, and potential referee objections. Make sure to use this skill whenever the user wants substantive academic feedback on a paper — not just surface edits. Triggers include: "review my paper", "give me feedback on this draft", "what would a referee say", "anticipate referee objections", "act as a referee", "check my identification strategy", "is my argument convincing", "review this manuscript", "critique my paper", "will this pass review", or any request for deep critique of academic writing beyond typos and grammar.

Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.

Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.

Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files. Make sure to use this skill whenever the user wants their existing R code evaluated or audited — not when they want new analysis written. Triggers include: "review my R script", "check my R code", "is my code replication-ready", "audit this R file", "does this code follow conventions", "will this reproduce", "check my analysis script", "code review", "review-r", or when the user has an existing .R file and wants quality feedback rather than new code.

R&R cycle — classify referee comments and route to appropriate agents. Replaces /respond-to-referee.

Apply the ScholarEval framework to systematically evaluate scholarly work across quality dimensions (novelty, rigor, significance, and clarity). Use to critique academic papers, research proposals, literature reviews, or grant applications and produce a structured, criterion-based assessment.

Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

Implements the Spec-Driven Development lifecycle (Intent, Requirements, Design, Tasks, Build) for structured feature development. Use when the user wants to scaffold a new feature spec, generate EARS requirements, create a technical design, break work into tasks, or check spec status. Trigger on keywords: sdd, spec-driven, ears requirements, feature spec.

Full autonomous research workflow using swarm mode for parallel execution

Multi-agent slide review (visual, pedagogy, proofreading). Use for comprehensive quality check before milestones.

Download, split, and deeply read academic PDFs. Use when asked to read, review, or summarize an academic paper. Splits PDFs into 4-page chunks, reads them in small batches, and produces structured reading notes — avoiding context window crashes and shallow comprehension.

End-to-end statistical writing assistant for LaTeX - draft title/abstract/keywords, expand outlines into sections, audit manuscripts, write reviewer reports and response letters, and scaffold book manuscripts.

Comprehensive Stata reference for writing correct .do files, data management, econometrics, causal inference, graphics, Mata programming, and 17+ community packages (reghdfe, estout, did, rdrobust, etc.). Covers syntax, options, gotchas, and idiomatic patterns. Use this skill whenever the user asks you to write, debug, or explain Stata code.

Clean and transform messy data in Stata with reproducible workflows

Run regression analyses in Stata with publication-ready output tables.

Design identification strategy or pre-analysis plan. Dispatches Strategist (proposer) and strategist-critic (validator). Replaces /identify and /pre-analysis-plan.

This skill covers structural econometric models. Use when the user is building, estimating, or debugging structural models — including BLP demand estimation, dynamic discrete choice, auction models, or any workflow involving moment conditions, nested fixed-point algorithms, or MPEC formulations. Triggers on "structural model", "moment conditions", "NFXP", "MPEC", "BLP", "random coefficients", "dynamic discrete choice", "CCP", "Rust model", "auction estimation", "GMM objective", "inner loop", "contraction mapping", or convergence/starting value problems in optimization-based estimation.

This skill covers academic journal submission, referee responses, and revision management. Use when the user is preparing a manuscript for submission, formatting for a specific journal, responding to referees, or managing revisions. Triggers on "submit", "referee", "revision", "R&R", "response letter", "journal", "formatting", "submission", "resubmit", "cover letter", "referee report", "revise and resubmit".

Submission pipeline — journal targeting, replication package, audit, and final gate. Replaces /submit, /target-journal, /audit-replication, /data-deposit.

Create and audit presentations (Beamer or Quarto RevealJS). Combines talk creation, visual audit, and compilation. Replaces /create-talk, /visual-audit, /compile-latex (for talks).

Find and fix technical debt including duplicated code, dead code, outdated patterns, and code smells. Run at the end of sessions to clean up.

Utility commands — commit, compile, validate-bib, journal, context-status, deploy, learn. Replaces individual utility skills.

Translate Beamer LaTeX to Quarto RevealJS. Multi-phase workflow with TikZ extraction and QA.

Validate bibliography entries against citations in all lecture files. Find missing entries and unused references.

Validate bibliography entries against citations in all manuscript files. Find missing entries and unused references.

Validate bibliography entries against citations in all source files. Find missing entries and unused references. Make sure to use this skill whenever the user has any concern about bibliography completeness or citation keys. Triggers include: "validate my bib", "check my citations", "find missing references", "I'm getting undefined citation errors", "are all my citations in the bib file", "check for unused references", "my bibliography is broken", "missing bib entries", "citation not found", or after adding new references from a lit review or before submission.

Perform adversarial visual audit of Quarto or Beamer slides checking for overflow, font consistency, box fatigue, and layout issues.

Explore methodological approaches through structured analysis before planning implementation

Document a recently solved research problem to compound methodological knowledge

Divergent research ideation — generate many candidate directions, then adversarially filter to the strongest

Transform research descriptions into well-structured implementation plans following project conventions

Run multi-agent econometric review on estimation code, identification arguments, and research artifacts

Execute research implementation plans efficiently while maintaining estimation quality and finishing features

Draft academic paper sections with notation protocol, anti-hedging, and humanizer pass. Replaces /draft-paper and /humanizer.

Draft a full academic paper manuscript from analysis outputs, project spec, and lit review. Make sure to use this skill whenever the user wants to turn completed analysis into a written paper — not to run analysis or review existing writing. Triggers include: "write the paper", "draft the manuscript", "write up the results", "start the paper", "turn my results into a paper", "write the introduction", "draft the empirics section", "I have my results, now write the paper", "help me write this up", "write the abstract", or any request to produce academic prose from existing research outputs.

How to work in a Codebase Wiki project (the `codebase-wiki` starter pack): an agent-authored, source-grounded wiki of the surrounding codebase. Read when the project has a `wiki/` knowledge base with `architecture/`, `modules/`, `flows/`, `concepts/`, and `guides/` sections plus `wiki/OVERVIEW.md`, or when asked to generate or refresh a wiki of this codebase. Carries the per-folder rules and freshness + log discipline, summarizes the audience/depth knobs and source-reference convention, and bundles the full generate/refresh procedure in `references/`. Complements the platform `open-knowledge` skill; does not replace it.

Promote existing research into a stable-status canonical article under `articles/` in a Knowledge Base project (the `knowledge-base` starter pack). Read when a decision has actually been made and the team wants the source-of-truth written down, or when asked to consolidate, canonicalize, promote research, or supersede an older article. Carries the decision-confirmation gate, the `supersedes:` chain that keeps the evidence trail intact, and the canonical voice. Does not conduct new research — that is the sibling `research-with-sources` skill.

Frame a new design proposal (RFC-shape) under proposals/ — problem before solution, named beneficiary and observable change, real alternatives, honest drawbacks, and a live open-questions backlog. Read when asked to frame a proposal, write an RFC, propose a design, pitch a change, draft a PRD-style design doc, or open a design proposal for review. Do NOT read to record a decision after it is accepted (use record-a-decision), to write an implementation spec (use write-a-spec), to write a postmortem (use write-a-postmortem), or to review or critique an existing design (use review-a-design).

How to work in a Knowledge Base project (the `knowledge-base` starter pack). Read when the project has the three-layer source-grounded layout — `external-sources/` → `research/` → `articles/` — or when asked how this project is organized. Carries the layer model, per-folder rules, status flows, and log discipline so this guidance does NOT live inside template bodies or log.md. The three procedures live elsewhere: ingest in the platform `open-knowledge` skill, research and consolidate as their own sibling skills in this pack. Complements the platform `open-knowledge` skill; does not replace it.

How to work in a Plain Notes project (the `plain-notes` starter pack): a flat notes/ folder plus a daily/ journal. The 'I just want to write' layout. Read when the project has these folders, OR when asked to jot a note, capture a quick thought, or write today's journal entry. Carries the linking habit and daily-entry behavior so templates and folder descriptions stay minimal. Complements the platform `open-knowledge` skill; does not replace it.

Open Knowledge Format (OKF) v0.2 guidance. Use when creating, reading, reviewing, or maintaining an OKF bundle; responding to OpenKnowledge `okf` plugin warnings; or choosing types, provenance, links, indexes, or logs.

Authoritative agent-runtime contract for working inside an OpenKnowledge project — a markdown-CRDT knowledge base exposed over MCP. Use whenever reading, listing, searching, editing, or linting any `.md` or `.mdx` file in the project, and before any `mcp__open-knowledge*` tool call (`exec`, `search`, `write`, `edit`, `lint`, and the rest). Installed by `ok init`, so its presence means this is an OpenKnowledge project and it governs every markdown file here. Covers the read/write tool surface, grounding and linking rules, folder/template conventions, the live browser preview, and the rule that OK's MCP tools — never native file tools — handle in-scope markdown.

Read when the user asks what OpenKnowledge is, wants to install it on a repository, wants to open or preview a single markdown file that is not part of an OpenKnowledge project, wants to share an OpenKnowledge project with collaborators, asks whether OpenKnowledge supports a particular capability, or asks how `ok init` / `ok cowork` / OK Desktop set up a project. Do NOT load to perform OpenKnowledge reads/writes — the runtime guidance for editing markdown inside an initialized OK project ships as a separate project-local skill installed into each detected agent's skills dir (for example `.claude/skills/open-knowledge/`) whenever `ok init` runs.

Use when the user wants to create, author, write, or design a new Agent Skill (a SKILL.md) — for OpenKnowledge or for their editors — including requests like 'help me write a skill', 'make a skill that…', 'turn this workflow into a skill', or improving an existing skill's triggering and discipline. Also use when capturing reusable agent guidance that should live as an installable skill rather than a one-off prompt. Covers choosing scope (project vs global), authoring inside a plugin or skills-distribution repo (write in the repo's own layout, never install), the SKILL.md frontmatter contract, progressive-disclosure structure, evaluating the skill, and installing it into the user's editors.

How to work in a Personal CRM project (the `entity-vault` starter pack, GBrain-compatible): a typed-entity vault of people, companies, meetings, and concepts, each a dossier with a rewritable summary plus an append-only timeline. Read when the project has these folders, OR when asked to capture notes about a person or company, log a meeting, prep for an upcoming meeting, or answer who someone is and what was last said. Carries the dossier convention and entity-extraction behaviors so that guidance does not live inside template bodies or folder descriptions. Complements the platform `open-knowledge` skill; does not replace it.