Agent Skill
Etetoolkit skill
etetoolkitforyourhealth111-pixel/Vibe-Skillsbundled/skills/etetoolkit/SKILL.md
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
always on
47 tokname + description
once used
4,457 tokSKILL.md body
bundled files
52 scripts
repo stars
3.8kGitHub
Install the Etetoolkit skill
Skills CLI (Claude Code, Codex, Cursor and others)
npx skills add https://github.com/foryourhealth111-pixel/Vibe-Skills --skill etetoolkit
Claude Code, by hand (all projects)
git clone --depth 1 https://github.com/foryourhealth111-pixel/Vibe-Skills.git /tmp/Vibe-Skills mkdir -p ~/.claude/skills cp -R /tmp/Vibe-Skills/bundled/skills/etetoolkit ~/.claude/skills/etetoolkit
For one project only, copy the folder into .claude/skills/ in that project instead. The agent picks it up when a task matches its description.
What it costs your context
Agent Skills load in three steps. Tokens counted with the o200k tokenizer; your model's count will differ a little.
| When | What loads | Cost |
|---|---|---|
| Every session | Name and description | 47 tok |
| When the agent uses it | The SKILL.md instructions | 4,457 tok |
| Only if opened | 5 bundled files (65 KB) | varies |
Until it is used, etetoolkit costs about 29× less than the median MCP server we measured (1,363 tokens on every turn). Installing all 150 skills from foryourhealth111-pixel/Vibe-Skills would load 9,038 tokens of descriptions. Skills vs MCP study
Checks
- Ships scripts the agent can run. Read them before installing.
- The instructions are over 500 lines; the specification suggests moving detail into reference files.
Checked 2026-10-22 · method
What's inside
The headings of its SKILL.md. Read the full file on GitHub.
- ETE Toolkit Skill
- Overview
- Core Capabilities
- 1. Tree Manipulation and Analysis
- 2. Phylogenetic Analysis
- 3. NCBI Taxonomy Integration
- 4. Tree Visualization
- 5. Clustering Analysis
- 6. Tree Comparison
- Installation and Setup
- Common Use Cases
- Use Case 1: Phylogenomic Pipeline
- Use Case 2: Tree Preprocessing and Formatting
- Use Case 3: Publication-Quality Figures
- Use Case 4: Automated Tree Analysis
- Reference Documentation
- Troubleshooting
- Newick Format Reference
- Best Practices
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