Genomics MCP Server

by rewire-bioio.github.rewire-bio/genomics-mcpv0.1.0

Discover EGA, ENA, ENCODE, GEO and NCBI datasets; retrieve bounded reads, variants, sequence and signal from indexed genomic files; and query versioned reference evidence.

3Dockerstdioofficial registry

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Active8d ago

Install Genomics MCP server

claude mcp add genomics -- docker run -i --rm ghcr.io/rewire-bio/genomics-mcp:0.1.0

{
  "mcpServers": {
    "genomics": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "ghcr.io/rewire-bio/genomics-mcp:0.1.0"
      ]
    }
  }
}

Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (project).

{
  "mcpServers": {
    "genomics": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "ghcr.io/rewire-bio/genomics-mcp:0.1.0"
      ]
    }
  }
}

Settings → Developer → Edit Config (claude_desktop_config.json), then restart.

{
  "servers": {
    "genomics": {
      "type": "stdio",
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "ghcr.io/rewire-bio/genomics-mcp:0.1.0"
      ]
    }
  }
}

Add to .vscode/mcp.json in your workspace.

{
  "mcpServers": {
    "genomics": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "ghcr.io/rewire-bio/genomics-mcp:0.1.0"
      ]
    }
  }
}

Add to ~/.codeium/windsurf/mcp_config.json.

Freshness

Active — last maintenance signal 8d ago. The newest of the signals below sets the band.

Last commit (default branch)
2026-10-02 · 8d ago · GitHub
Latest release
2026-09-25 · 15d ago · GitHub · v0.1.0
Package published
no data · npm/PyPI
Registry entry updated
2026-09-25 · 15d ago · official registry · v0.1.0

FAQ

›How do I install the Genomics MCP server in Claude Code?

Run: claude mcp add genomics -- docker run -i --rm ghcr.io/rewire-bio/genomics-mcp:0.1.0. For Cursor, VS Code, Claude Desktop and Windsurf, use the install tabs above.

›Does Genomics require an API key?

No required environment variables are declared in its published metadata.

›Can I use Genomics as a remote (hosted) MCP server?

No hosted endpoint is published; it runs locally over stdio.

›Is Genomics in the official MCP registry?

Yes, as io.github.rewire-bio/genomics-mcp.